rs52509210 SNP Detail

Summary

• ID
  rs52509210
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:109531713 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGGATGTCT ATGAATGTTG
  ACTGCGTGTG TGTGTGTGTG TGTGTATGTG TGTGTGTGTG TGTGTGTGTG TGTGCGTGTG
  TGCGTGTGTG CACGTGTGCG TGTGTGCGTG TGTGCATGTG TGCGTGTGCG TGTGTGTGTG
  TGTAAGGGTG GACAGGTATG AGTGATGGAG TGATTGAAAG ATTGGCAGAC AGATGAGAGG
  M
  TAGATGAATG GATGAGTGAA TGAATGAATG AATGAGTGAG TGAATTAATG GATGGGTATA
  TTCTCTGGTT GAGCTTCTTG GATGAAAGGG TAATGTTTGA ATGGCTGTTG GTTGATTGAA
  GAAAGCCTAC AGTATTTTAT CTTGTCTGAT AATGTATTAG CATTTAAGCT GATGTATTAG
  TATTTAAGGT GTCTGCTGAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61717763	NES17649264	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	A	A	A	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52509210					SNP	C	C	C	C	C	C	A	C	C	A	A	A	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61717763	NES17649264	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:109531713 () rs orientation: forward

Symbol	Name	Function Class
Meg3	maternally expressed 3	within coordinates
Mir770	microRNA 770	1494 bp downstream
Rr472783	regulatory region 472783	1511 bp proximal
Tssr115120	transcription start site region 115120	603 bp downstream
Tssr115121	transcription start site region 115121	564 bp downstream
Tssr115122	transcription start site region 115122	368 bp downstream
Tssr115123	transcription start site region 115123	648 bp upstream
Tssr115124	transcription start site region 115124	1039 bp upstream