rs52510028 SNP Detail

Summary

• ID
  rs52510028
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:20362249 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCAGCCCA CAGCCACTGA
  CAGGCCCTGA GCGCACATAG CCCTCCTTGC CCAGGCCTCT GCTTCCTGGC GGCGCGTTAG
  AGGCGGGCGA CCCGATTGGC GGCCAGGCCT GCGCCCCGCC CCGCCGGGCG GGACTCCGCG
  CCCTCCCCAG CCGGGCCCTC CCCTTTCCGC GGGAGGCGTC CTGTTTAGCG GCTTGGTGGC
  K
  CCCAGTTCTC GCTGACTGCG CGCCCGCGTC TGGGCTCCTT TGCAGAGGAC TCGGTAGCTG
  CAGCTCCCGG AGCACAGCGG GCAGAGCTGC GGACTGCGCG CTCCCCTGCT GCCCCGGGCC
  TCCAGCGGTG GCTCCCGCGC CCCGCGGCGA CTTCCGCTCC CGCGCTTCCC TTTGTTCAAG
  TCCCCGAGCG GCTGTGGGGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61578390	NES17528135	PERLEGEN	MM_PANEL2	f	SNP	G		G	T	G	G	G	G	T	G	T	G	G
ss137276311	ENSMUSSNP857680	ENSEMBL	ENSEMBL_Sanger	f	SNP		G					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52510028					SNP	G	G	G	T	G	G	?	G	T	G	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61578390	NES17528135	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:20362249 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4468	CpG island 4468	within coordinates
Gm49697	predicted gene, 49697	267 bp upstream
Gm61293	predicted gene, 61293	within coordinates
Rr463625	regulatory region 463625	within coordinates
Tssr112921	transcription start site region 112921	within coordinates