rs52510957 SNP Detail

Summary

• ID
  rs52510957
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:96087357 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGATCTCT GCAGATCTCT
  GAAGCTCTTT GCTGCAAACA GGCCAGCTCC CCTTCCCTCC CTGCCCAGGG CTTCCTCCTG
  AGCCTCTATC CCAGCCTTCC TTCCCCTCTT ATGGCTCTGC AGATAGGCTA ATCAGCCCCT
  CTGTGGTTCT GATTGCTTGC GCTGGAGATA TTTTTACCTT ATGCAAATAG GTGATATGAA
  R
  GTGCCCTCAT CTGTCAGCAG CCACCCCATC CCCCCCAACC TCCCTCCCCC CTCCACACAC
  ACACACACAC ACACACACAC ACACACACCA GCTCCATGCC TTTTGCCATT TGCCTGGTGG
  CCTTGCCCAT TGGACTTTTC CCACAAGGCT TCAGGAAAAC TGTCCAAAAG AGAAGTGGAC
  TCTGCATAGG AGCTTGGTAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60651648	NES16268933	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52510957					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60651648	NES16268933	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:96087357 () rs orientation: forward

Symbol	Name	Function Class
Mmp15	matrix metallopeptidase 15	within coordinates
Rr1960	regulatory region 1960	within coordinates
Rr668229	regulatory region 668229	956 bp distal
Rr668230	regulatory region 668230	within coordinates