rs52512459 SNP Detail

Summary

• ID
  rs52512459
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164754998 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACACTCCTTT AATCCCAGCA CTTGGGAGGC AGAGGCAGGC
  GGATTTCTGA GTTCGAGGCC AGCCTGATCT ACTGAGTGAG TTCCAGGACA GCCAGGGCTA
  Y
  ACAGAGAAAC CCTGTCTCAA AAAATAAACA AACAAAAAAA AAAGAGGAGA AGAAAAATGA
  ATTCAGTGAA AAGGACAAGT GGCTTTGAGT TATCACTAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss148232939	ENSMUSSNP1320686	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs52512459					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164754998 () rs orientation: forward

Symbol	Name	Function Class
2210414I22Rik	RIKEN cDNA 2210414I22 gene	145 bp downstream
Cpgi12677	CpG island 12677	713 bp distal
Rr367365	regulatory region 367365	861 bp downstream
Rr569761	regulatory region 569761	1684 bp distal
Rr569762	regulatory region 569762	1729 bp distal
Rr569763	regulatory region 569763	1332 bp distal
Rr569764	regulatory region 569764	1348 bp distal
Rr569765	regulatory region 569765	831 bp distal
Rr569766	regulatory region 569766	1160 bp distal
Rr569767	regulatory region 569767	41 bp proximal
Tssr21686	transcription start site region 21686	1623 bp downstream
Tssr27593	transcription start site region 27593	1868 bp upstream
Tssr27594	transcription start site region 27594	1839 bp upstream
Tssr27595	transcription start site region 27595	1779 bp upstream
Tssr27596	transcription start site region 27596	1495 bp upstream
Tssr27597	transcription start site region 27597	1470 bp upstream
Zfp335	zinc finger protein 335	mRNA-UTR
Zfp335os	zinc finger protein 335, opposite strand	within coordinates