rs52512796 SNP Detail

Summary

• ID
  rs52512796
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:40963019 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCACA CACTTCCCAC TTCACCCTTA
  A
  AAAAGGCATT TTAAAAAGCT TTAGT                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss144660230	ENSMUSSNP5524294	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
ss322631346	CHEV_8_41595332	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52512796					SNP	A	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:40963019 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cnot7	CCR4-NOT transcription complex, subunit 7			Intron
				Noncoding-Transcript-Variant
Cpgi20281	CpG island 20281			858 bp proximal
Rr662586	regulatory region 662586			741 bp proximal
Rr662587	regulatory region 662587			1316 bp proximal
Tssr2553	transcription start site region 2553			1238 bp downstream
Tssr2554	transcription start site region 2554			1499 bp upstream
Tssr76955	transcription start site region 76955			1438 bp upstream
Tssr76956	transcription start site region 76956			1791 bp upstream
Tssr76957	transcription start site region 76957			1811 bp upstream
Tssr81046	transcription start site region 81046			498 bp downstream
Tssr81047	transcription start site region 81047			1280 bp downstream
Tssr81048	transcription start site region 81048			1299 bp downstream
Tssr81049	transcription start site region 81049			1320 bp downstream
Tssr81050	transcription start site region 81050			1685 bp downstream
Vps37a	vacuolar protein sorting 37A			1805 bp upstream