rs52513692 SNP Detail

Summary

• ID
  rs52513692
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:148894754 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A GAGAATATGT ATGATATGTA TACCTGTGTA TGTTGTATGT
  GTATATATGT GTGTAATGTG TGTGTTTGTG TATATGTGTA ATGTGTGTGT GTGTGTGTGT
  R
  TGTGTAATGT GTGTGTGTGT GTGTAAGTAG AAAGGCAATC CCAGTTTGAT GCAGATAATA
  CTTACCTAGT AATGCAAATA TGACCAGTGA CTTCATCAGA T                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss144698556	ENSMUSSNP6024860	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52513692					SNP	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:148894754 () rs orientation: forward

Symbol	Name	Function Class
1810059H22Rik	RIKEN cDNA 1810059H22 gene	within coordinates
Cpgi17084	CpG island 17084	1203 bp proximal
Gm15406	predicted gene 15406	within coordinates
Gm15409	predicted gene 15409	within coordinates
Gm52833	predicted gene, 52833	within coordinates
Rr111639	regulatory region 111639	447 bp proximal
Rr124806	regulatory region 124806	646 bp proximal
Rr378799	regulatory region 378799	within coordinates
Rr378800	regulatory region 378800	1443 bp upstream
Tssr49867	transcription start site region 49867	1319 bp upstream
Tssr49868	transcription start site region 49868	1375 bp upstream
Tssr49869	transcription start site region 49869	1847 bp upstream
Tssr54596	transcription start site region 54596	1336 bp downstream
Tssr54597	transcription start site region 54597	1510 bp downstream
Tssr54598	transcription start site region 54598	1615 bp downstream