rs52513788 SNP Detail

Summary

• ID
  rs52513788
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:171076778 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTGCCTTGA GAGAGTGTGC TTTGGTTTCT
  TAGTCCCCCC CAGTTCTGGA AGCAGAAGAG TCATTAGTTC CCTCCTCTAA CACCCACACA
  CATACACATA CTGGTCACTA TCCCCATCCC AGGTtctctc tctctctctc tctctctctc
  W
  ctctctctct ctctctctGA GAtgtgtgtg tgtgtgtgtg tgtgtgtgtg tgtCTCCTCC
  CCTCCCCCCA TGGGAAATGA GGAGTCAAAG ATTACTAGAT ATTCCAGGAA CTATTGGATT
  TGAAAGGTGG GGTCAAGGAA GTAGCAGAGA                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss146158271	ENSMUSSNP3549186	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss320117554	CHEV_1_173179340	CHEVERUD	SCREENING_POP	f	SNP		A	T
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs52513788					SNP	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171076778 () rs orientation: forward

Symbol	Name	Function Class
Adamts4	ADAM metallopeptidase with thrombospondin type 1 motif 4	1212 bp upstream
Cpgi1016	CpG island 1016	1689 bp distal
Gm71631	predicted gene, 71631	within coordinates
Ndufs2	NADH:ubiquinone oxidoreductase core subunit S2	within coordinates
Rr372446	regulatory region 372446	762 bp downstream
Rr423259	regulatory region 423259	1597 bp distal
Rr423261	regulatory region 423261	1522 bp distal
Rr423262	regulatory region 423262	within coordinates
Rr423263	regulatory region 423263	620 bp proximal
Rr423264	regulatory region 423264	900 bp proximal
Rr423265	regulatory region 423265	1225 bp proximal
Tssr10000	transcription start site region 10000	1832 bp downstream
Tssr10001	transcription start site region 10001	1207 bp upstream
Tssr10002	transcription start site region 10002	1346 bp upstream