rs52514272 SNP Detail

Summary

• ID
  rs52514272
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:51366216 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTTGTTGTT TTTTTTTTAA AGCTATTTTT AAAGATGCGT
  ATGGGGTAAA GGAACTATAT GAATGTAATT GCAGGTGCCC AAAGAGGCCA AAAGCACCAG
  A
  TATATATATA TATATATATA TTTTTTTTTT TTTTTTGTTA AAAAAACCTA AAATCATAGG
  GCTTCAAAAA CGGAAGCTAC AGTGAAAAAG GAAGTGCTA                       
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss139475194	ENSMUSSNP1743534	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs52514272					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:51366216 () rs orientation: forward

Symbol	Name	Function Class
Rnase6	ribonuclease, RNase A family, 6	within coordinates
Rr404085	regulatory region 404085	within coordinates
Rr491778	regulatory region 491778	182 bp distal
Rr491779	regulatory region 491779	14 bp proximal
Tssr125412	transcription start site region 125412	146 bp upstream
Tssr125413	transcription start site region 125413	171 bp upstream
Tssr125414	transcription start site region 125414	221 bp upstream
Tssr125415	transcription start site region 125415	248 bp upstream
Tssr125416	transcription start site region 125416	280 bp upstream
Tssr125417	transcription start site region 125417	296 bp upstream
Tssr125418	transcription start site region 125418	326 bp upstream
Tssr125419	transcription start site region 125419	359 bp upstream