rs52516618 SNP Detail

Summary

• ID
  rs52516618
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:115097816 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T AAGACAGGCA GACTTGCCAG GGACCAATGA CACAACTCTG
  GATGATAATG CCCTGAGAAC AGTCTGAGAT AAGTGTATTA CACACACACA CACACACACA
  C
  ACACACACAC ACACACACAC ACACAGAGGC TTGGAAAACT ATCAGAAGAA TCAGTTGAAA
  CTTTGAAGGT ACTCATCACA CCCCAGACTA ATCAACTCTG T                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss137005449	ENSMUSSNP2940807	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs52516618					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:115097816 () rs orientation: forward

Symbol	Name	Function Class
Rr193053	regulatory region 193053	1816 bp distal
Stt3b	STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)	within coordinates