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rs52516636 SNP Detail
Summary
  • ID
    rs52516636
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr16:50362077 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                ATTATGCCGA TTAAAGTAAT
    ATAAATAACA AAATTAAACA AATAACCTAG GATACCGTAT TAGTTACTCA AAAAGTAAAG
    TTAACTGGTG GCCAGAGGGG AGAACCTGAT ATCTTTATAA CTCTCAAATT TCCCCAGTGT
    TAAGCCGAGA GTTTTGTGTG CATGGTTTCT TTCTCCGTAA TTGTGTTTTG TATTTAGGGC
    R
    TTTCACATCC ATCCATCTAT CTATCTATCT ATCTATCTAT CTATCTATCT ATCTATCTAT
    CTATCTATAA AACTGTGTTT GTGTATTGTG TGATAGAAGA AAAATATTTC TATTAAAAAT
    AACTAGCAAA ATAGCCCCGA CATGCCGCTT GAAGCACCTG GGCAGCTCAG ACATGAACTT
    CCTAAACCAT GAAAAACAAG                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
DBA/2J
FVB/NJ
KK/HlJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss60212606 NES15723145 PERLEGEN MM_PANEL2 f SNP G G G G G G G G G G G A G
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
DBA/2J
FVB/NJ
KK/HlJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs52516636 SNP G G G G G G G G G G G A G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss60212606 NES15723145 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr16:50362077 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
G730013B05Rik RIKEN cDNA G730013B05 gene within coordinates
Gm60707 predicted gene, 60707 1101 bp downstream
Rr318669 regulatory region 318669 924 bp proximal
Rr323833 regulatory region 323833 954 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/10/2024
MGI 6.24
The Jackson Laboratory