rs52517090 SNP Detail

Summary

• ID
  rs52517090
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:37929484 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GATGAGGGTG GGGAGAGAAA GAGGGAGTAA AGGAGGGAAG
  GAGGAAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGGGA GAGAGAGAGA
  G
  AGAGAGAGAG AGAGAGAGAA ACAAGAGTCA GGCTTGAGTC CTGCAGTTAT TTCTGGCTTT
  GAATTGTGTC CAAGTCTCAT ACATTCACAG ACGGCCTCG                       
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss134816623	ENSMUSSNP5513545	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	A/J
rs52517090					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37929484 () rs orientation: forward

Symbol	Name	Function Class
Rr575579	regulatory region 575579	within coordinates
Rr575580	regulatory region 575580	587 bp proximal
Rr575581	regulatory region 575581	995 bp proximal