rs52517639 SNP Detail

Summary

• ID
  rs52517639
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:87702972 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGTG TGTGTGTGTG TGTGTGTGTG
  Y
  GTGTGTGTTA GTTAGGGTTT CTATT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss146179436	ENSMUSSNP7192208	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss325499249	CHEV_17_87794884	CHEVERUD	SCREENING_POP	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs52517639					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:87702972 () rs orientation: forward

Symbol	Name	Function Class
D17Mit130	DNA segment, Chr 17, Massachusetts Institute of Technology 130	1545 bp distal
Rr333853	regulatory region 333853	429 bp proximal
Rr343633	regulatory region 343633	342 bp proximal
Stpg4	sperm tail PG rich repeat containing 4	within coordinates