rs52518145 SNP Detail

Summary

• ID
  rs52518145
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:60552095 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A AAGTTAACTG GTCACATTGG CATGTCAATA CAAACATATA
  TATATATATA TATATATATA TATATATATA TATATATACA CACATACATA TATACACACA
  Y
  ACATACATAC ATATGTACAC ACATATATGT ATGTATATAT ATATACATGC ATATAAACAC
  ACACATATAT ACCTACATAT AAACATACAC ACATACACAT A                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146651388	ENSMUSSNP360844	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52518145					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:60552095 () rs orientation: forward

Symbol	Name	Function Class
Itgb6	integrin beta 6	within coordinates
Rr557685	regulatory region 557685	415 bp distal
Rr557686	regulatory region 557686	622 bp distal
Rr557687	regulatory region 557687	613 bp proximal
Rr557688	regulatory region 557688	882 bp proximal
Tssr24212	transcription start site region 24212	780 bp downstream
Tssr24213	transcription start site region 24213	885 bp downstream
Tssr24214	transcription start site region 24214	919 bp downstream