rs52519058 SNP Detail

Summary

• ID
  rs52519058
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:57588320 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTAACAAC TGAATCAAAA
  AAGCTGAAAA AATCATAGTT AATCTTATTT CTAATTCACT TTAGTCACTG TAAATTCCCT
  AAAGAGTAAA TACTAGATTA TTCAATAAGC ATATTCAATG TATAATAAAA TGTGTATGTT
  TGATTTTTAA TATTTTTTTC TGAAGTTTCC ATCTGGGTTT TCTATTATGG ATTTTTTTAA
  Y
  GATAGACTTT GTGGTTCCAA CTACTACGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTT
  TGATATATAT ATAAATATAT ATATATATGT GTGTGTATGT ATACACATAT ATGTATATAT
  GTATATATGG ATACATATAT GTATATGTGT ATATATGTAC ATATGAATAT ATGTATGTTT
  ATCTATACAT ATATATATAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60617290	NES16285989	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52519058					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60617290	NES16285989	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:57588320 () rs orientation: forward

Symbol	Name	Function Class
Rr814	regulatory region 814	21 bp distal