rs52519862 SNP Detail

Summary

• ID
  rs52519862
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:152950224 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATCAACCAG TCAAACAATA
  AACGTAAAAT ATTACAATTC TTTAGGGAAT CCAAGGGTAT TTGGTCTCTT AGGTAGGGGT
  CCAAAATCTC TGGGGATAGG GTTTAGAATC CTTTGGACAG GCTCATTACA TCATGGGGGG
  CTTAAACGCA CTAGTGGGGG AGGGGGACTG GGAATCTTGG GAGGGCGGGT CAAACCTTGG
  K
  GTCTGAGTAA GTCCTTCAAG GACTGGTTAG CGCCCTTGAG GACAGGGTTA GCAAAGAAAT
  GCTGAAATTC TTTGGAGGTG AATTTAGAGC AGGAGACAAG AGAGCCAGAG TGGGAGTTAG
  GCTCTTAGAG GGCGGAGTCG GGGTATTTGG GGGCGGGGTT TGCATCACCC AGGGTGCGGC
  TAAGGCGCCC AGATGGCCAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147984283	ENSMUSSNP6213557	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs52519862					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152950224 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12479	CpG island 12479	141 bp proximal
Hck	hemopoietic cell kinase	164 bp upstream
Rr567550	regulatory region 567550	266 bp distal
Rr567551	regulatory region 567551	within coordinates
Rr567552	regulatory region 567552	203 bp proximal
Rr567553	regulatory region 567553	367 bp proximal
Tssr20863	transcription start site region 20863	631 bp downstream
Tssr20864	transcription start site region 20864	595 bp downstream
Tssr20865	transcription start site region 20865	170 bp upstream
Tssr20866	transcription start site region 20866	185 bp upstream
Tssr26882	transcription start site region 26882	714 bp downstream