rs52519942 SNP Detail

Summary

• ID
  rs52519942
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:135715773 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ATATATATT TCAATAGTGT AATCAGCTGC
  ATAAATTTTC CTCAGCCAAC CTTGGCTCTC CTGATTAAGA ACAGGTCCAC CTTCTTCCTG
  CTCCACACTG CCCTCTAGTG GCAACTAGAG GTCTAGGGGT CCTTCGTGTT TTCCCAGAAG
  Y
  CTCTTGGCTG TGTCCAGAGG AGAACAGGgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt
  gtgtgtgtgt gtgtgtgtgt gtgtgtTCCA GTATGCTCCA AACACAGTCT CTCTAAGTTT
  TTGGAGACAT CTGTGCACAC AATACTGTGT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60803596	NES16473482	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	C	C	C	T	T	C	T		T	C	T	T		T
ss319993366	CHEV_1_137684612	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs52519942					SNP	T	C	T	C	C	C	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60803596	NES16473482	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135715773 () rs orientation: forward

Symbol	Name	Function Class
Rr419276	regulatory region 419276	within coordinates
Rr419277	regulatory region 419277	35 bp distal
Rr419278	regulatory region 419278	593 bp proximal
Rr419279	regulatory region 419279	912 bp proximal
Rr419280	regulatory region 419280	1699 bp proximal
Rr419281	regulatory region 419281	1970 bp proximal
Tnni1	troponin I, skeletal, slow 1	Intron