rs52520301 SNP Detail

Summary

• ID
  rs52520301
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:106095024 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATAATAGAA GGAGTGAACT
  GACTCCTATA AATTGTCCTC TGACCTCCAC ACACTTTTCA TTTCACACAG GTGTCCACAC
  ATATATAACA TGCATGCTCG CGTGCGCGCG CGCGCGCGCG CGCGCACACA CACACACACA
  CACACTAAAC AAACAAACAA ACAAACAAAC ATAATATGAT TGTTGTAACT TTAAGGCCAA
  R
  CATAGTGAGT TCCACACCCT GCCTGTCTCA AAACAAACCA AAACCCTGTA GCTGAATAAT
  GGTGCTTTAA TTCCCAATAA ATTTAGAAAT TAGATTTCAA ATTAAAAAAA TAGAGATAAC
  AATAATTCAT CAAGGAGATA TAGCAAGTAT TTAAAAAAAT AGTATATACC ACCCAACATG
  AGGCTATGGT AAGGACATGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62559003	NES17102164	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	A	A	A	A	A	A	A	A	A	A	A
ss146767833	ENSMUSSNP4869588	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52520301					SNP	G	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62559003	NES17102164	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:106095024 () rs orientation: forward

Symbol	Name	Function Class
Gm48970	predicted gene, 48970	within coordinates
Gm63380	predicted gene, 63380	47 bp downstream
Rr294089	regulatory region 294089	1285 bp proximal
Rr390111	regulatory region 390111	626 bp upstream
Tssr130160	transcription start site region 130160	1590 bp downstream