rs52520751 SNP Detail

Summary

• ID
  rs52520751
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:19240510 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGTAAGAT TAGGGAACAC
  TGGGTGAGGT AACATCAGAA CTTTTCCTAC CCCTTGGCAC TTTTCTGTAA AACAAATATT
  TTTTTTCTTT CAAAAAGCAA ATCTTGCTGG GCAGTGATGG CGCACACCTT TAATTCTAGC
  ACTCCGGAGG CAGAGGCAGG TGGATTTCTG AGTTCGAGGC CAGCCTGGTC TACAGAGTGA
  R
  TTCCTGGACA GCCAGGGCTA TACAGAAAAA CCCTGTCTCG AAAACAAAAC AAAACAAAAC
  AAAAGCAAAG CAAAACAAAA GCAAAGCAAA GCTTAAAAGT TCAAAAGCAT AAGGACTGCA
  GGTCTTTCTT CGATTAGATC CTGGCTGGAT GTATTTCAAA CTCTCTTTTT CCTTCACCAG
  GGTTTGGTAC CAGGCACCAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss134665696	ENSMUSSNP158940	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52520751					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19240510 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13001	CpG island 13001	1409 bp proximal
Mtfr1	mitochondrial fission regulator 1	981 bp upstream
Rr397614	regulatory region 397614	1640 bp upstream
Rr573951	regulatory region 573951	493 bp proximal
Rr573952	regulatory region 573952	1274 bp proximal
Rr573953	regulatory region 573953	1775 bp proximal
Tssr28500	transcription start site region 28500	956 bp upstream
Tssr28501	transcription start site region 28501	975 bp upstream
Tssr28502	transcription start site region 28502	1013 bp upstream
Tssr28503	transcription start site region 28503	1020 bp upstream
Tssr28504	transcription start site region 28504	1739 bp upstream
Tssr28505	transcription start site region 28505	1753 bp upstream
Tssr28506	transcription start site region 28506	1766 bp upstream
Tssr28507	transcription start site region 28507	1868 bp upstream
Tssr28508	transcription start site region 28508	1880 bp upstream
Tssr28509	transcription start site region 28509	1942 bp upstream