rs52522158 SNP Detail

Summary

• ID
  rs52522158
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:93454716 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAGT TACTATTTTT TTAAATTTTT
  W
  AAATTAATTA ATTAATTAAT TTTTA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss148847043	ENSMUSSNP3604180	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs52522158					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:93454716 () rs orientation: forward

Symbol	Name	Function Class
Gm72287	predicted gene, 72287	363 bp upstream
Tssr51943	transcription start site region 51943	425 bp upstream
Tssr51944	transcription start site region 51944	410 bp upstream
Tssr51945	transcription start site region 51945	399 bp upstream