rs52522823 SNP Detail

Summary

• ID
  rs52522823
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  128
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:43669421 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTGGGAAAT ACTGGCCTGT GACAGTCCCT GACTTCCTGT
  CTCCTGTCTT GATGTTTTCT AACCTTTTCC CACCCCACAC TTCTTCCTAC CATCACCATC
  W
  CCATCCTGCT GCCCTTCCTT ATTCGTCCCT CCCCCAGCCC CCCAGATCTC CCGTTGGCCA
  TTTCTCCCTC CCCCCACCCC CTTATCTCTT GATGCTTGCC                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss62737835	NES17343085	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	A	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs52522823					SNP	T	T	T	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62737835	NES17343085	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:43669421 () rs orientation: forward

Symbol	Name	Function Class
Adgrf5	adhesion G protein-coupled receptor F5	1921 bp upstream
Rr527086	regulatory region 527086	1431 bp proximal
Rr527087	regulatory region 527087	1932 bp proximal
Tssr144671	transcription start site region 144671	1490 bp upstream
Tssr144672	transcription start site region 144672	1792 bp upstream
Tssr144673	transcription start site region 144673	1833 bp upstream
Tssr144674	transcription start site region 144674	1856 bp upstream
Tssr144675	transcription start site region 144675	1893 bp upstream