rs52523072 SNP Detail

Summary

• ID
  rs52523072
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:124412837 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GTTTTGGGC TGTCAAACTA ATCTCAATAT
  acacatgcat acaaacacac acacacacac acacacacat gcatacaaac acacacacac
  acacacacac acacacacac acacacacaA TCCTGTTGAC CTCACCTAGG AGCTGCTGAC
  W
  TATGTAAATC ATGGTCAACA CAGAAGAAAT TTTTTGCCAA AGTAAAGTCT GAAAGGATTC
  TCTCCTCTCT GCAAGTATAA GTTTGGTGGT CACAGTTTTA TTCACATGCA GGTTTGTGGG
  ATAAGCAAGC ATGCACGCAG AAGTCCATGG                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60792943	NES16469164	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A		T	A	A	A		A
ss319946974	CHEV_1_126381677	CHEVERUD	SCREENING_POP	f	SNP											A					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs52523072					SNP	A	A	A	A	A	A	T	A	A	A	A	T	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60792943	NES16469164	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:124412837 () rs orientation: forward

Symbol	Name	Function Class
Dpp10	dipeptidylpeptidase 10	within coordinates
Tssr13333	transcription start site region 13333	576 bp downstream