rs52523628 SNP Detail

Summary

• ID
  rs52523628
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:154933468 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCTGGAGC AGAGCTGGGA
  GCCCACCTGG GTCCTACAGG AGAAGCCTGC TGCTTGCCCC TACAGGATGG GGACAAGGAT
  AAAACTGGTA TCAGGGAAAA GCACGGGTGT GGGCTCAAGG TCAAGAATAG AGAGGTGGGG
  GGGGGACTTT TGGGATAGCA TTGGAAATGT AATTGAAGAA AATACGTAAT AAAAAAAAAA
  R
  AAAAAAAAGA ATAGAGAGGT GGGAAAAGAG GAGAAACGGA GCGCAGTATC GAGAGAGAGA
  GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGTAT CTCCAGAGAG GACTCTGACC
  CTGGGCAGAC TGACAGTAAA AGACACCGCT CTCCTCTCTC TTGCCCCTTT ACACTGAACT
  CCATCCAGCC TTTGCTCCAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss145774477	ENSMUSSNP6219378	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs52523628					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:154933468 () rs orientation: forward

Symbol	Name	Function Class
Cpgi880	CpG island 880	1940 bp proximal
Gm29282	predicted gene 29282	543 bp upstream
Gm41980	predicted gene, 41980	within coordinates
Gm51651	predicted gene, 51651	within coordinates
Gm70900	predicted gene, 70900	1275 bp downstream
Rr28748	regulatory region 28748	1932 bp proximal
Rr372279	regulatory region 372279	425 bp downstream
Rr396410	regulatory region 396410	1836 bp upstream
Tssr248	transcription start site region 248	1801 bp downstream
Tssr9521	transcription start site region 9521	1964 bp upstream
Tssr14331	transcription start site region 14331	1812 bp downstream
Tssr14332	transcription start site region 14332	1826 bp downstream
Tssr14333	transcription start site region 14333	1836 bp downstream