rs52523888 SNP Detail

Summary

• ID
  rs52523888
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:44888705 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGGTTGTT TCTGCAGAGT
  TCAACCTCAC AGACACTCTG ACCTCACTGG CTACTGGCTC CGCCCCCTGC ACCCTGTGAT
  CTTCTGCTTA GCACCCATTA GCCTCGAGCC ACCGCGCTGT CTCTGCCTCT CTGTCTCTGT
  CTCTCTGGGC CTTTGCGGTC TCTGTCCTGT GTGTCTCTTT CCCTGGGTCT CTCTCTTTGC
  Y
  CTCTTTCTTC TAGAGCAGGT GCTCCGATGT GCTTGGGGGC CAGGGTTGGA CCCCTGGGGA
  AGTGAAAGGG CTGCAGAGGA GGTGTGACAG TCCCAGGAGT GAGGAGGGCA GCGAGGCAGT
  GCCTGAATAT CCGGTGGAGG AAGTGAACCT CAGATGGCAC TTCCTACCTC TGCGGAGAAA
  CCTGAGGGGA GGAGGCCCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss149131876	ENSMUSSNP6384630	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52523888					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:44888705 () rs orientation: forward

Symbol	Name	Function Class
Cd37	CD37 antigen	166 bp upstream
Cpgi19038	CpG island 19038	1289 bp proximal
Rr380753	regulatory region 380753	within coordinates
Slc6a16	solute carrier family 6, member 16	1804 bp upstream
Tssr66503	transcription start site region 66503	1793 bp upstream
Tssr66504	transcription start site region 66504	1828 bp upstream
Tssr72351	transcription start site region 72351	525 bp upstream
Tssr72352	transcription start site region 72352	417 bp upstream
Tssr72353	transcription start site region 72353	215 bp upstream
Tssr72354	transcription start site region 72354	178 bp upstream
Tssr72355	transcription start site region 72355	148 bp upstream
Tssr72356	transcription start site region 72356	within coordinates
Tssr72357	transcription start site region 72357	7 bp downstream
Tssr72358	transcription start site region 72358	23 bp downstream
Tssr72359	transcription start site region 72359	57 bp downstream
Tssr72360	transcription start site region 72360	94 bp downstream
Tssr72361	transcription start site region 72361	111 bp downstream