rs52525360 SNP Detail

Summary

• ID
  rs52525360
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:133867194 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCTG TTTCTCCTTT GCCAGGGCCA
  A
  ATACAATTCT TTCTCTTTTT AAAAA                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss134469294	ENSMUSSNP5897326	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs52525360					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:133867194 () rs orientation: forward

Symbol	Name	Function Class
Nxf2	nuclear RNA export factor 2	1691 bp upstream
Tssr164159	transcription start site region 164159	1719 bp upstream
Tssr164160	transcription start site region 164160	1678 bp upstream