rs52525827 SNP Detail

Summary

• ID
  rs52525827
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  128
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:65757175 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCTCTGGGCT CACAACATGA CCTACAAGAA GTTACCATAG
  GTCAAGTGGT CAAAACAAAA CAAAACAACA ACAAAAAACA ACTCACATAT TAAATGTAGA
  M
  AAACAAAACA CAGGAGTTAA TACTTCATTC CATTTAGTGA TGAGTTGGAT AGATATTGCC
  ACATGACGAA ATGTCAAAAT CAGCAGTCTT GCAAAGCCAA                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
ss60892125	NES15973388	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	A	A	A	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
rs52525827					SNP	C	C	C	C	A	A	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60892125	NES15973388	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:65757175 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17503	CpG island 17503	720 bp distal
Gm16838	predicted gene, 16838	942 bp upstream
Prdm5	PR domain containing 5	within coordinates
Tssr56854	transcription start site region 56854	1129 bp downstream
Tssr61222	transcription start site region 61222	549 bp upstream
Tssr61223	transcription start site region 61223	497 bp upstream
Tssr61224	transcription start site region 61224	485 bp upstream
Tssr61225	transcription start site region 61225	468 bp upstream
Tssr61226	transcription start site region 61226	413 bp upstream