rs52527027 SNP Detail

Summary

• ID
  rs52527027
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30815551 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTCT CTTCCTCTTT GGTCTCCTGC
  K
  TACTTCCGTC TCTGCTCCTA TCTCT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148699922	ENSMUSSNP6453486	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
ss322139445	CHEV_7_31901145	CHEVERUD	SCREENING_POP	f	SNP				G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52527027					SNP	G	G	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30815551 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18835	CpG island 18835	2 bp distal
Hpn	hepsin	836 bp upstream
Rr645021	regulatory region 645021	855 bp distal
Rr645022	regulatory region 645022	346 bp distal
Rr645023	regulatory region 645023	470 bp proximal
Scn1b	sodium channel, voltage-gated, type I, beta	398 bp downstream
Tssr71932	transcription start site region 71932	1410 bp upstream
Tssr71933	transcription start site region 71933	818 bp upstream
Tssr71934	transcription start site region 71934	766 bp downstream