rs52527125 SNP Detail

Summary

• ID
  rs52527125
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:156957318 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTCTATAAC CTCAGCACTC
  AGAAGACTGA GGCAGGATTA TAACTTCAAA GTCAGCAGGG CCTATAAAGC AAGACTTCTC
  TCTCCTGCCC TCCCCCAGGG AAAAACAAAA AAAGAAATCC CTCTTTCTGT GTGCACATAT
  ATGTATGTAT TTATGTATGT GTGTATATAT GTATGTATGT AATGTATGTA TATACTAATA
  K
  ATTTCTCTTA GTTCCCTCCT TCCCGATTTT GCTGCTGTTG TTTTCATTCT GTAGCCCAGG
  CTGTCCTGGA GCTCACTCTA TAGATCAGGC TGCCCTTGAA CTCAGAGATC CACACCCAGC
  TCCCCCCCCT TTTTTTCTTT TGTAACCCAG TCTCACCTTG AATTCATTTT ATAGGTGAGG
  AAGACCCTAC CTTCACCTCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148092209	ENSMUSSNP5201502	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52527125					SNP	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156957318 () rs orientation: forward

Symbol	Name	Function Class
Rr568435	regulatory region 568435	438 bp distal
Rr568436	regulatory region 568436	1556 bp proximal
Rr568437	regulatory region 568437	1729 bp proximal
Samhd1	SAM domain and HD domain, 1	Intron
Tssr27142	transcription start site region 27142	1993 bp upstream
Tssr27143	transcription start site region 27143	1072 bp upstream