rs52527182 SNP Detail

Summary

• ID
  rs52527182
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:6387372 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTGTATTT TTTTAATTGT
  ATTTTTTTGA TTTTTCAAAT AACCTTTTTG TTTTAATTTT AATTTTACTT GTAATTCATT
  TTTTTACACT CCATATTCCA TTCCCCTCCC CTCCCACCCT CCAACTGCTC CACATCCCAC
  ACCTCTTCCA CCACACCCTG TCTCCACTTG GAGGCCCCCA CCCTGTACCC CATCCGACCT
  Y
  TAAACTCCCT GGGGCCTCCA GTCTCTTGAG GGTTAGGTGC ATCATCTCTG AATGAACACA
  GACCTGGAAG TCTTCTACTG TATGTGTGTT GGGGACCTCA TATCAGCTTG TATATGCTGT
  CTGTTTGGTG GTCCAGTGTT TGAAAGACCT TGGGGGTCCA AATTATTTAA GACTGCTGGT
  CCTCCTACAG GATCACCCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145961181	ENSMUSSNP6696068	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52527182					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:6387372 () rs orientation: forward

Symbol	Name	Function Class
Sdcbp	syndecan binding protein	within coordinates
Tssr36394	transcription start site region 36394	1854 bp downstream
Tssr36395	transcription start site region 36395	301 bp downstream