rs52527681 SNP Detail

Summary

• ID
  rs52527681
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:152950250 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATATTACA ATTCTTTAGG
  GAATCCAAGG GTATTTGGTC TCTTAGGTAG GGGTCCAAAA TCTCTGGGGA TAGGGTTTAG
  AATCCTTTGG ACAGGCTCAT TACATCATGG GGGGCTTAAA CGCACTAGTG GGGGAGGGGG
  ACTGGGAATC TTGGGAGGGC GGGTCAAACC TTGGTGTCTG AGTAAGTCCT TCAAGGACTG
  R
  TTAGCGCCCT TGAGGACAGG GTTAGCAAAG AAATGCTGAA ATTCTTTGGA GGTGAATTTA
  GAGCAGGAGA CAAGAGAGCC AGAGTGGGAG TTAGGCTCTT AGAGGGCGGA GTCGGGGTAT
  TTGGGGGCGG GGTTTGCATC ACCCAGGGTG CGGCTAAGGC GCCCAGATGG CCAGTGAGCG
  CCACTGGGTT GCGGCTCCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147984292	ENSMUSSNP1719125	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52527681					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152950250 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12479	CpG island 12479	115 bp proximal
Hck	hemopoietic cell kinase	138 bp upstream
Rr567550	regulatory region 567550	292 bp distal
Rr567551	regulatory region 567551	within coordinates
Rr567552	regulatory region 567552	177 bp proximal
Rr567553	regulatory region 567553	341 bp proximal
Tssr20863	transcription start site region 20863	657 bp downstream
Tssr20864	transcription start site region 20864	621 bp downstream
Tssr20865	transcription start site region 20865	144 bp upstream
Tssr20866	transcription start site region 20866	159 bp upstream
Tssr26882	transcription start site region 26882	688 bp downstream