rs52528072 SNP Detail

Summary

• ID
  rs52528072
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:35887233 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTCC CTCTCTCTCT CCTTCTCCCC
  R
  GAGAATGCAG GCCCCCCCAG ATGCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148227274	ENSMUSSNP3790804	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
ss321510506	CHEV_5_36072538	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52528072					SNP	A	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:35887233 () rs orientation: forward

Symbol	Name	Function Class
Rr609995	regulatory region 609995	624 bp distal
Rr609996	regulatory region 609996	123 bp distal
Sh3tc1	SH3 domain and tetratricopeptide repeats 1	within coordinates
Tssr45957	transcription start site region 45957	1477 bp downstream
Tssr50711	transcription start site region 50711	873 bp upstream
Tssr50712	transcription start site region 50712	850 bp upstream
Tssr50713	transcription start site region 50713	811 bp upstream
Tssr50714	transcription start site region 50714	794 bp upstream
Tssr50715	transcription start site region 50715	603 bp upstream
Tssr50716	transcription start site region 50716	577 bp upstream