rs52529056 SNP Detail

Summary

• ID
  rs52529056
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:16677781 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGCTCACA CCTATGATCC
  CAGCATTCTG AGGCAGGAGG ATTACCAGGA CTTTGAGGCT AGCCTGGGCT ACATAGTGAT
  ATCCTGTTTC AAAAACCAAA CCCCAAAAGG ATCCAGGTGT GCTAGCATAC AACGTCAATC
  CAGCATTCAG CAAGCAAAGG CAGAAGGCAG AGGGCAGAGG GCAGAGGCAG AGGCTGACAG
  R
  TCTCTATGAG TTTGTGGCTA ACCTGAGCTA CACAGTTCTA GGCTAAACTG GCCTACAAAG
  TGAGATCCCG TTTCAGAAGC AGAATATAGG GACATCCATG AGTGAAGCTG GTCTCCATGA
  GTCTGGTACC CACATACTGA GTACCACACA CCCGAAATGA TACCCCTTGG CTCATAAAGG
  ACAGCTGACC GGGGCGTTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148399964	ENSMUSSNP623965	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52529056					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:16677781 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18406	CpG island 18406	598 bp proximal
Gm71929	predicted gene, 71929	1436 bp downstream
Pnma8b	PNMA family member 8B	826 bp upstream
Rr368243	regulatory region 368243	600 bp upstream
Rr642821	regulatory region 642821	487 bp distal
Rr642822	regulatory region 642822	336 bp proximal
Rr642823	regulatory region 642823	749 bp proximal
Rr642824	regulatory region 642824	1787 bp proximal
Tssr64660	transcription start site region 64660	789 bp upstream
Tssr64661	transcription start site region 64661	1838 bp upstream
Tssr70792	transcription start site region 70792	1793 bp downstream