rs52529200 SNP Detail

Summary

• ID
  rs52529200
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:128175648 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T ATATGTATAT ATATATATAA AACAAGGTTT CATATAGCCA
  AGCCAGGCCT CAAACTCACT ATATCCATCT CTCTTTCTCT CTCTCTCTCT CTCTCTCTCT
  C
  TATATATATA TATATATATA TATATATATA TATATATATA TATGCAAGAA TGGCCTTGAA
  TTTGTCATTC TCATACCTCT ATCTTGCAAG TGCTGGAATT A                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss133637971	ENSMUSSNP2044785	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52529200					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:128175648 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18048	CpG island 18048	1350 bp proximal
Gm10010	predicted gene 10010	within coordinates
Gm66766	predicted gene, 66766	1619 bp upstream
Rr399953	regulatory region 399953	1822 bp upstream
Rr639207	regulatory region 639207	1236 bp proximal
Rr639208	regulatory region 639208	1630 bp proximal
Rr639209	regulatory region 639209	1887 bp proximal
Tssr63410	transcription start site region 63410	1867 bp downstream
Tssr63411	transcription start site region 63411	1889 bp downstream
Tssr63412	transcription start site region 63412	1891 bp downstream
Tssr63413	transcription start site region 63413	1913 bp downstream
Tssr63414	transcription start site region 63414	1953 bp downstream