rs52529987 SNP Detail

Summary

• ID
  rs52529987
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:57311610 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGCTCTGCT CATCCACCCC
  TGGGACACAG GTCACATGGG TGAGCAGTGG CAACTTCTGA GCGCACTCCC ACCCACTGGT
  TGGTCCCTAA CTGGCACCTA CCCTTTGGGC CATCCTCCTG CTGGGGCACT TTGGGCTTGC
  CTTCTGTCTC ATCTGGAGAG CTGCTATAGG GCAGAGAAAG GCAAGCCGTA AAGTTGGGCG
  R
  CCACAGGCCT GGCCTGCCTT GCCCCTGCCT CATCTCTGCC TTGCCTGTGC CTTACCTGGA
  GCCATCAGAC ATGTAGTCTA CCTCCTGGCC CTCGAAGTCC CCATCATCGC TGTCCTCAAA
  AGCCTCATCA TCTGAGCCCT TCTTCTTTTT CTTCTTCCTG CCTGCCTTGG TCACAGGGGC
  CTTTTTCTTA GCCTTGGAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62804078	NES17359624	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52529987					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62804078	NES17359624	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:57311610 () rs orientation: forward

Symbol	Name	Function Class
Gtf2f1	general transcription factor IIF, polypeptide 1	within coordinates
Tssr148848	transcription start site region 148848	177 bp upstream
Tssr148849	transcription start site region 148849	80 bp downstream
Tssr148850	transcription start site region 148850	200 bp downstream
Tssr148851	transcription start site region 148851	254 bp downstream
Tssr148852	transcription start site region 148852	839 bp downstream