rs52530183 SNP Detail

Summary

• ID
  rs52530183
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:82906661 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGAG GTGGGTGGGG GATGTCAAGA
  Y
  CACACTTAAT AATTCTTCTA ATCAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss136700064	ENSMUSSNP2793264	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss323044121	CHEV_9_82918215	CHEVERUD	SCREENING_POP	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs52530183					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:82906661 () rs orientation: forward

Symbol	Name	Function Class
Gm39383	predicted gene, 39383	within coordinates
Gm57057	predicted gene, 57057	592 bp upstream
Rr401561	regulatory region 401561	685 bp downstream
Rr683838	regulatory region 683838	628 bp distal
Rr683839	regulatory region 683839	483 bp distal
Tssr90739	transcription start site region 90739	601 bp upstream