rs52530395 SNP Detail

Summary

• ID
  rs52530395
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:41493429 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAGA GAGAGAGAGA GAGAGAGAGA
  S
  AGAGAGAGAG AGAGAGAAAA GTTTG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322927325	CHEV_9_41390216	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs52530395					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:41493429 () rs orientation: forward

Symbol	Name	Function Class
Gm28119	predicted gene 28119	within coordinates
Gm69589	predicted gene, 69589	within coordinates
Mir100hg	Mir100 Mirlet7a-2 Mir125b-1 cluster host gene	within coordinates
Mir125b-1	microRNA 125b-1	131 bp downstream
Rr677062	regulatory region 677062	782 bp distal
Rr677063	regulatory region 677063	668 bp distal
Rr677064	regulatory region 677064	520 bp distal
Rr677065	regulatory region 677065	121 bp distal
Rr677066	regulatory region 677066	within coordinates
Rr677067	regulatory region 677067	7 bp proximal
Rr677068	regulatory region 677068	734 bp proximal
Tssr84518	transcription start site region 84518	1416 bp downstream
Tssr84519	transcription start site region 84519	1381 bp downstream
Tssr84520	transcription start site region 84520	1211 bp downstream
Tssr84521	transcription start site region 84521	1166 bp downstream
Tssr84522	transcription start site region 84522	1129 bp downstream
Tssr84523	transcription start site region 84523	1033 bp downstream
Tssr84524	transcription start site region 84524	873 bp downstream
Tssr84525	transcription start site region 84525	817 bp downstream
Tssr84526	transcription start site region 84526	782 bp downstream
Tssr84527	transcription start site region 84527	129 bp downstream
Tssr84528	transcription start site region 84528	891 bp upstream
Tssr88997	transcription start site region 88997	1325 bp upstream