rs52531395 SNP Detail

Summary

• ID
  rs52531395
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:51184601 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCCT CGCCCGCTGC ACCGATGCAC
  S
  GGAGAAAAGT TCCCCTGTGC TTACC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135172564	ENSMUSSNP5011545	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss320762239	CHEV_3_51081102	CHEVERUD	SCREENING_POP	f	SNP			G	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs52531395					SNP	G	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:51184601 () rs orientation: forward

Symbol	Name	Function Class
4930577N17Rik	RIKEN cDNA 4930577N17 gene	within coordinates
Cpgi13132	CpG island 13132	within coordinates
Elf2	E74-like factor 2	within coordinates
Gm64767	predicted gene, 64767	569 bp downstream
Rr397655	regulatory region 397655	836 bp downstream
Rr576259	regulatory region 576259	906 bp distal
Rr576260	regulatory region 576260	within coordinates
Rr576261	regulatory region 576261	178 bp proximal
Rr576262	regulatory region 576262	289 bp proximal
Tssr29048	transcription start site region 29048	906 bp downstream
Tssr29049	transcription start site region 29049	317 bp downstream
Tssr33194	transcription start site region 33194	1120 bp upstream
Tssr33195	transcription start site region 33195	97 bp downstream
Tssr33196	transcription start site region 33196	131 bp downstream
Tssr33197	transcription start site region 33197	290 bp downstream