rs52531819 SNP Detail

Summary

• ID
  rs52531819
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:158952688 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCTC TTCCCTTCCC CCCTCCCTTC
  W
  CCCTCCCTCC ATGTGGTCAT GGTAT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss134520057	ENSMUSSNP2319475	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
ss325989496	CHEV_X_156607624	CHEVERUD	SCREENING_POP	f	SNP				T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52531819					SNP	T	T	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:158952688 () rs orientation: forward

Symbol	Name	Function Class
Rr3474	regulatory region 3474	313 bp proximal
Rr5628	regulatory region 5628	113 bp proximal
Rr7001	regulatory region 7001	1772 bp distal