rs52532719 SNP Detail

Summary

• ID
  rs52532719
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:18908372 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCCTGGGCT CCATCCATAC TAGCCTTCTC CTTGCTAAGG
  ACTAAGCCAA ACTCTATCTT GGGACCTTTT ATTTTTATTT TTTATTATTT TTATATTTTT
  W
  TATATATATT TTTTTTTGCC CAGAAACCAT TCAGCTTTGG GTATAAATAC TTCTTCCCTT
  TTTTCTTCTT TTTTTCCTTT TTAAAAATAT TTGTTTGTT                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148469531	ENSMUSSNP6342575	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52532719					SNP	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:18908372 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18449	CpG island 18449	1253 bp distal
Cpgi18450	CpG island 18450	1847 bp proximal
Eml2	echinoderm microtubule associated protein like 2	1974 bp upstream
Gm71808	predicted gene, 71808	1652 bp downstream
Rr155270	regulatory region 155270	972 bp distal
Rr155271	regulatory region 155271	29 bp proximal
Rr167137	regulatory region 167137	1171 bp distal
Rr167138	regulatory region 167138	1028 bp proximal
Tssr64790	transcription start site region 64790	1969 bp upstream
Tssr64791	transcription start site region 64791	1999 bp upstream