rs52533457 SNP Detail

Summary

• ID
  rs52533457
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30212700 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGGG AGAGGGGAGG GGAGGAGAAG
  C
  GCTAGCCTAG GGTGGTAGTG ACTTG                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148681084	ENSMUSSNP3860616	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
ss322134941	CHEV_7_31298294	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52533457					SNP	C	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30212700 () rs orientation: forward

Symbol	Name	Function Class
Arhgap33os	Rho GTPase activating protein 33, opposite strand	1847 bp upstream
Prodh2	proline dehydrogenase (oxidase) 2	within coordinates
Tssr2186	transcription start site region 2186	1954 bp upstream
Tssr65778	transcription start site region 65778	1870 bp upstream