rs52533962 SNP Detail

Summary

• ID
  rs52533962
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:42335062 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C AAATTTTTTT ATTAGAAAGG AGAAAGAAAG AAAGAAAGAA
  AGAAAGAAAG AAAGAAAGAA AGAAAGAAAG AAAGGAAAAG AAAGGAAAAA AGAAAGGAAA
  G
  GAAAAGAAAA GAAAAGAAAA GAAAAGAAAA GAAAAGAAAA GAAAAGAAAA GAAAAGAAAA
  GAAAAGAAAA GAACGAAAAA GAAGCAGGCT AGAAGGTTAG T                    
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss147003700	ENSMUSSNP3548665	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs52533962					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:42335062 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9990	CpG island 9990	444 bp proximal
Gm5504	predicted gene 5504	650 bp downstream
Lars1	leucyl-tRNA synthetase 1	301 bp downstream