rs52534010 SNP Detail

Summary

• ID
  rs52534010
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:76374736 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCGGTGGG AGCGCGCCGG
  ACACGAACTC AAGCGCAACC GCGGGCGTAC CAACCCACCC GGCCTCGCCT CGCCTCACGC
  TCGACGGGGA AGGCGGAACC AATCAGCGAG CGACGTTTCC CTTCCGATTC CAGGCCCCCG
  ACGCGGTGCT CACACCCCGG GCTCCCCGGT CGCTGATTGG CTGCGCGCGC CGCCGGTCCC
  R
  GCCGGAGGCG GGAGTCGGCG CCCCGCGCCT GCCCGCGCCC CGCTCGGCCC CCGGCCCTGC
  CCGCGGCGCC CGGCCTCCTT CCGTCCCTGC CGTGCTCCCT CCGTCTTCCG TGCGCGCCCG
  CTCGGCCGGC GTGCCTCACG CCTAACGGGC GGCCGCGGGC GCCAATCAGC GGGCGGCAGG
  GTGCCAGCCC GGGGCTGCGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401278427	MGP_WTSI_18_76401319	EVA_MGPV3	EVA_MGPV3	f	SNP	A	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs52534010					SNP	A	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401278427	MGP_WTSI_18_76401319	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:76374736 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10251	CpG island 10251	within coordinates
Rr540992	regulatory region 540992	within coordinates
Rr540993	regulatory region 540993	47 bp proximal
Smad2	SMAD family member 2	within coordinates
Tssr151989	transcription start site region 151989	351 bp downstream
Tssr151990	transcription start site region 151990	303 bp downstream
Tssr151991	transcription start site region 151991	201 bp downstream
Tssr151992	transcription start site region 151992	within coordinates
Tssr151993	transcription start site region 151993	227 bp upstream
Tssr151994	transcription start site region 151994	470 bp upstream