rs52534403 SNP Detail

Summary

• ID
  rs52534403
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:30065801 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGGAATGT GGCGTTCTTC
  AGGGCTGCAA GGAGATGGGG TTCGAAGAAG GCTGGAGCTG ACCCAAGGAC AGGTATCCAT
  GTTCCACCCC AGCTTCTCCC CTCAAACTGG TTGCACGCCA ATTCTGCGCG CGCGCGCGCG
  CGCGCACACA CACACACACA CACACACACA CACACACACA CACACAAATA TCTCTCAGCC
  Y
  AGAAATGGTT CCAATAGCTC AGAGATGTTT TCATAGCTTT AAAGAGCTCA ATGCAGAGAA
  GTGAGTTTGG TGCTGACTAC AGGCGTTAGT AATGAGCACA CTTCATCAGT GAGATGTGCT
  GGCCCAGGCA GTGTCCATGG ATCAGGGCAC CTAACCTGTC CAGCTGTCTC TGAGGGAGGC
  TGTTACTATG TATTCCTTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J	WSB/EiJ
ss60556121	NES16574244	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	C		T	T		C
ss325355137	CHEV_17_29983772	CHEVERUD	SCREENING_POP	f	SNP											T			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J	WSB/EiJ
rs52534403					SNP	T	T	T	T	T	T	C	T	T	C	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60556121	NES16574244	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:30065801 () rs orientation: forward

Symbol	Name	Function Class
Gm56908	predicted gene, 56908	within coordinates
Mdga1	MAM domain containing glycosylphosphatidylinositol anchor 1	within coordinates
Rr330462	regulatory region 330462	201 bp distal
Rr330463	regulatory region 330463	1600 bp proximal
Rr341132	regulatory region 341132	1 bp distal
Rr341133	regulatory region 341133	1941 bp proximal
Rr392501	regulatory region 392501	within coordinates
Rr392502	regulatory region 392502	1956 bp upstream
Tssr143596	transcription start site region 143596	292 bp downstream
Tssr143597	transcription start site region 143597	269 bp downstream
Tssr143598	transcription start site region 143598	1393 bp upstream