rs52535944 SNP Detail

Summary

• ID
  rs52535944
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:121746298 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGATGTTG GTACTGAACC
  TAGGACCTCT GTAAGAACAG TTAGTGCTGC TCTTAACTGC CAAGGCATTT CTCCAGCCCT
  CTGCTACCTA TTTTTAAAGT GCATGAGTGG AGACAGCAGC TTACATACCT CTGTTTCAGA
  AAGTTTGTTG TTGTTACTGT TGTTGTTGCT GTTGTTGTTT TGGGACAGGT TTCCTGTGTA
  K
  CCCTGGCTGT CCTGGAACTC ACTTTGTAGA CCAGGCTGGC CTCGAACTCA GAAATCCGCC
  TGCCTCTGCC TCCCGAGTCC TGGAATTATT TTATTTTATT TTATTTCATT TTATTGGTTT
  TTCGAGACAG GGTTTCTCTG TATAGCCCTG GCTGTCCTGG AACTCACTCT GTAGACCAGG
  CTGGCCTTGA ACTCAGAAAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	MSM/Ms
ss145833517	ENSMUSSNP2327019	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	MSM/Ms
rs52535944					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:121746298 () rs orientation: forward

Symbol	Name	Function Class
Dctn5	dynactin 5	within coordinates
Gm15489	predicted gene 15489	1213 bp downstream
Rr153390	regulatory region 153390	303 bp proximal
Tssr68863	transcription start site region 68863	1212 bp upstream