rs52537065 SNP Detail

Summary

• ID
  rs52537065
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:173568281 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T TAAAGGCCTC CAGAGGCAGA GGCAGAGGCA GAGGCAGAGG
  CAGAGGCAGA GGCAGAGGCA GAGGCAGAGG CAGAGGCAGA GGCAGAGGCA GAGGCAGAGG
  A
  AGAGGCAGAG GCAGAAGAGG AAGAGAAAGA GGAAGAGGCA GAAAGACTGT AACTATGAGG
  GTGGCCTCAG CTATGTGCCA AGTTATAGGC AAACCTGGCT T                    
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss146240420	ENSMUSSNP1855852	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs52537065					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:173568281 () rs orientation: forward

Symbol	Name	Function Class
Ifi207	interferon activated gene 207	within coordinates
Rr29033	regulatory region 29033	520 bp proximal
Tssr15303	transcription start site region 15303	1796 bp upstream
Tssr15304	transcription start site region 15304	292 bp downstream
Tssr15305	transcription start site region 15305	975 bp downstream
Tssr15306	transcription start site region 15306	1002 bp downstream
Tssr15307	transcription start site region 15307	1043 bp downstream
Tssr15308	transcription start site region 15308	1080 bp downstream