rs52537259 SNP Detail

Summary

• ID
  rs52537259
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:57070259 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCCTGGTCTA CAAAGTGAGT TCCAGGACAG CCAGGGCTAT
  ACAGAGAAAC CCTGTCTCGA AAAACCAAAA AAAAAAAAAA AAGAAAGAAA GAAAGAAAGA
  G
  AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAAAGAAAG AAAGAAAGAA AGAAAGAAAG
  AAAAGAAAAG AAAAGAAGAG AAAAGGAAAA AAGAAAATA                       
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss146633759	ENSMUSSNP4842966	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	A/J
rs52537259					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:57070259 () rs orientation: forward

Symbol	Name	Function Class
4930555B11Rik	RIKEN cDNA 4930555B11 gene	1584 bp upstream
BB557941	expressed sequence BB557941	within coordinates
Cpgi11661	CpG island 11661	1410 bp proximal
n-TAcgc8	nuclear encoded tRNA alanine 8 (anticodon CGC)	1831 bp upstream
Rr396968	regulatory region 396968	1732 bp upstream
Rr557184	regulatory region 557184	767 bp proximal
Rr557185	regulatory region 557185	1496 bp proximal
Rr557186	regulatory region 557186	1572 bp proximal
Tssr24122	transcription start site region 24122	1501 bp downstream