rs52537565 SNP Detail

Summary

• ID
  rs52537565
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:151997059 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCACCAGC AGAGTCTCCA
  GTGGGGAACC TGGCAGTTCT GGTCTCCGGG GCATTCACAC TCATATGTGC ATTCCCACAC
  TTCATTAAAA ATAACATCTT TGGCCAGGCG GTGGTGGCGC ACGCCTTTAA TCCCAGCACT
  TGGGAGGCAG AGACAGGCGG ATTTCTGAGT TCGAGGCCAG CCTGGTCTAC AGAGTAAGTT
  S
  CAGGACAGTC AGGGCTACAC AGAGAAACCC TGTCTGGAAA AACCAAAACC AACCAAACAA
  AAAAACATCT TTTGCAAATA ATTCAGTTGT TAAATCCAAC TACTTAATCT ACCAGGTGTG
  CAAAAATGTA GAGTAACCGA GGAGGGTTTT ACTATCCAAA GGACACTTCA AACTCATGAG
  GCAAACTGTA AAAATGTGCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136101825	ENSMUSSNP2736213	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52537565					SNP	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151997059 () rs orientation: forward

Symbol	Name	Function Class
Miga1	mitoguardin 1	within coordinates
Tssr32405	transcription start site region 32405	1091 bp downstream