rs52537584 SNP Detail

Summary

• ID
  rs52537584
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:29151184 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACAGTTAC ATGTTTACGA
  AGGGTCACAA TGTTGTGGTC TGAGTCTTCT CAGATGTTTC AATAAACATG AGTCATGGAA
  TCAGAGGCCA TAGGTTCAGT TTCTACCAGA GCTCCGCCTA CAGACGAGAG CTCCGCCTAC
  AGACGAGAGC TCCGCCTACA GACGAGAGCT CCGCCTACAG ACGACTCTCC TGATTCTGAG
  R
  GCTCCAAAGC ACCTCACAGA TGCTTGCTTG CTTGCTTTCT TTCTTTCTTT CTTTCTTTCT
  TTCTTTCTTT CTTTCTTTCT TTCTTTCCTT TTTTTGTTTT GAGGCTCTGT TTCAACCTGA
  GTGGCTCCCT CCACCCCAGG CACAAGGTGA CAAGGACCAC ACACACATAC CCTTGAATAC
  ATTTCCTGCA TGGATGGCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60559593	NES16576371	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52537584					SNP	G	G	G	G	G	G	G	G	G	A	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60559593	NES16576371	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:29151184 () rs orientation: forward

Symbol	Name	Function Class
Gm16191	predicted gene 16191	within coordinates
Pxt1	peroxisomal, testis specific 1	1776 bp downstream
Rr392487	regulatory region 392487	763 bp downstream