rs52538096 SNP Detail

Summary

• ID
  rs52538096
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:144555062 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGTCTTTGTC TGTTATAACT TGGAGTGCAT TGCTCCAGGG
  ACTTCTGTCA TTCAGAGTTC CCATTGAGAA ATAAGCTGTT ATACTGATGG GTATTCCTTT
  T
  TATGTAGCTT TATATTTTTT CTCTTGCAGT TTCCTTCCTT CCTTCCTCCC TCCCTCCCTC
  TCTCTCTTTT CCTCCCTTCC CTTCCCTCCC CTCCCCTCC                       
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss147805099	ENSMUSSNP6601914	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs52538096					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:144555062 () rs orientation: forward

Symbol	Name	Function Class
Dtd1	D-tyrosyl-tRNA deacylase 1	within coordinates
Rr374001	regulatory region 374001	1609 bp upstream
Tssr20549	transcription start site region 20549	1641 bp upstream
Tssr20550	transcription start site region 20550	1703 bp upstream
Tssr26613	transcription start site region 26613	1416 bp downstream