rs52538210 SNP Detail

Summary

• ID
  rs52538210
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:89510167 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGATAATGG ATGGATGGAT
  GGATGGATGG ATGGATAGAT AGATAGACAG ACAGAATGTT TAGACAGATA GATCTATCTC
  TGTTATCCCT AAAAAAAAAA AAAGACAAGA GCTAAAAAGC TATCTGACTC AAAGTTCTAA
  GAATATCCTG AAGCACTATG GGGTAAGAAG CAACAGATAG AACTTCAAAG TCAAATCAAT
  R
  CCCAATTTGA AAAAAGAATT AAAAAGATAA ATGAAAGTTT TTCAAAACGT ATAATCATTC
  TTCTACTTAA AAGTGTGCAG TGGTGGGGTG AGAAAGATGT TCCAGCAAGG CATCTGCTGC
  CAAGTCCAAT GGCCTAAGTG CCACAGGGTG GGAAGAATCA ATTCTTACAA ACTGTCCTCT
  GACTTCCACA CATGTGTGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss147258242	ENSMUSSNP2005970	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs52538210					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:89510167 () rs orientation: forward

Symbol	Name	Function Class
Scyl2	SCY1-like 2 (S. cerevisiae)	within coordinates
Tssr98887	transcription start site region 98887	110 bp upstream