rs52538256 SNP Detail

Summary

• ID
  rs52538256
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:52028910 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAAAAACCT TTGATTAACA
  TGCCTAAAGC TAGCCACCAA GGTCTATTCC CTTATTTGGT CACTTCCTCC TGAGGCTGAC
  TACCAAGGTC CAGCTATCTA AATATCGAAG TTTAAACTTA AACACCTTAT CCTAACTTGG
  GGTTTTCCCT TGTACCTTTA TAAACCGCCA TTTTCCTATG TGCCAAGCCT ATCTTCTCTC
  W
  ATCCAGAGGC AGTCTTTTGT CCTCCAGGAC AAATACTTCT CCTCTCCTCT GTTCCCTTCT
  CCTTCCCCTT CATCCTCTAT CTCCCGTATT TGTTCTTTAT TCCGTGGCCC CTGGCTCTCT
  GGGGCAAATT AATCTCCTTT GTGCTGAGAA CTTGGTCTTG GGGAGTCCTG AGCCCATACT
  TTTCCATATC TGTTGAATGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss137728922	ENSMUSSNP6921753	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs52538256					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:52028910 () rs orientation: forward

Symbol	Name	Function Class
Gm60186	predicted gene, 60186	693 bp downstream
Rr387210	regulatory region 387210	1767 bp downstream
Rr387211	regulatory region 387211	1166 bp upstream